Basic SQL Queries to Create and Retrieve Information from a Database
In this article, basic SQL queries are described to create, update, drop,…
Installing FragGeneScan on Ubuntu
FragGeneScan is a bioinformatics software to find fragmented genes in short reads…
Video Tutorial: Basic Functions of PyMol
Previously, we have shown how to analyze Vina output of docking in…
Virtual Screening: Frequently Asked Questions & Answers for Starters
Virtual screening can be difficult for beginners. Here are some FAQs for…
MD Simulation using GROMACS: Things to remember
Molecular dynamics (MD) simulation is considered amongst the important methods in bioinformatics.…
EasyVS: A new webserver for easy virtual screening
EasyVS is a web-based bioinformatics tool that simplifies the selection of the…
Video Tutorial: MD Simulation using GROMACS
This is a video tutorial of our existing article "Molecular Dynamics (MD)…
Some common awk bash commands to modify multi-FASTA files
Some basic operations on multi-FASTA sequence files is a tedious task without…
Differential Gene Expression Analysis of RNA-Seq data using MeV
Differential gene expression analysis helps in discovering quantitative changes in the expression…
Installing CRISPRCasFinder on Ubuntu
CRISPR/Cas9 is a genome editing technology trending fastly. It is used to…
Common mistakes made during Autodock Vina Installation and Execution
Several errors occur while installing MGLTools and Autodock Vina on Ubuntu. We…
Extract FASTA sequences based on sequence length using Perl
Here are simple Perl scripts to filter out FASTA sequences from a…
Most widely used web servers/software for single-cell RNA-seq analysis
Gene expression in single cells is measured using single-cell RNA sequencing technology.…
How to download small molecules from ZINC database for virtual screening?
It is difficult to manage thousands of compounds altogether while performing virtual…
Prepare receptor and ligand files for docking using Python scripts
Docking software such as Autodock4 and Autodock Vina require input receptor and…
Tutorial: MD Simulation of a Protein-Ligand Complex using GROMACS
Previously, we have provided a tutorial on molecular dynamics (MD) simulation of…
Tutorial: Basic protein structure modeling using MODELLER
SALI MODELLER is one of the most widely used command-line bioinformatics software…
Virtual Screening Methodology for Structure-based Drug Designing
Virtual High Throughput Screening (vHTS), also known as Virtual Screening (VS) is…
How to use Clustal Omega and MUSCLE command-line tools for multiple sequence alignment?
Clustal Omega and MUSCLE are bioinformatics tools that are used for multiple…
Perl script to find duplicate FASTA sequences using their header?
In a large file of FASTA sequences, it is nearly impossible to…