Methodology for Homology Modeling of a Simple Protein
Previously, we have explained the initial methods involved in the structure prediction…
Video Tutorial: Virtual Screening using Autodock Vina
This is a video tutorial of our existing article.
What does a bioinformatician do?
Bioinformaticians play an important part in data analysis and result interpretation in…
Tutorial: A quick MD simulation using NAMD and VMD
Molecular dynamics (MD) simulation has become an important methodology in research covering…
Update: A multi-epitope in silico vaccine candidate designed for Covid-19
Covid19 has created a great threat to human health. As you are…
Update: Selection analysis on spike glycoprotein of SARS-CoV-2
We have recently conducted a selection pressure analysis on SARS-CoV-2 spike glycoprotein…
Phylogenetics analysis of SARS-CoV-2 spike glycoproteins
A novel coronavirus (CoV), named Severe Acute Respiratory Syndrome-CoV-2 (SARS-CoV-2) or nCoV-2019,…
Video tutorial: Installing GROMACS on Ubuntu
This is a video tutorial of our existing article on GROMACS (Abraham,…
How to perform virtual screening using Autodock Vina?
Virtual screening is used to identify small molecules that are most likely…
Installation of LigPlot+ on Ubuntu
LigPlot+ is a bioinformatics software to visually analyze the protein-ligand interactions in…
How to concatenate FASTA sequences using Perl?
Here is a simple Perl script to concatenate multiline FASTA sequences into…
Tutorial: Molecular dynamics (MD) simulation using Gromacs
Gromacs is one of the most widely used software for molecular dynamics…
Vina output analysis using Discovery Studio visualizer
The discovery studio (DS) visualizer offers several features for analyzing docking results.…
Installing and executing ProtTest3 on Ubuntu
Prottest3 is a software which is used to select a best-fit amino…
How to blast against a particular set of local sequences (local database)?
BLAST is a local alignment tool widely used as a preliminary step…
How to search motif pattern in FASTA sequences using Perl hash?
Here is a simple Perl script to search for motif patterns in…
A perl script to convert multiline FASTA sequences into a single line
There are different software or tools which require different kinds of input,…
Video tutorial: How to install Autodock Vina on Ubuntu?
This is a video tutorial of Autodock Vina installation on Ubuntu, based on…
How to perform blind docking using AutoDock Vina?
Blind docking is done when the catalytic/binding residues are unknown in a…
How to calculate dN, dS, and dN/dS ratio on a set of genes using MEGA?
If you want to get a quick idea about the non-synonymous vs…