Tutorial: Constructing phylogenetic tree using MEGA7
MEGAX is a bioinformatics software/tool used for phylogenetic tree construction. In this…
IonCRAM: New Tool for Ion Torrent Sequence Files Compression
One of the major next-generation sequencing (NGS) technologies that are most frequently…
Installing MEME suite on Ubuntu
MEME suite is used to discover novel motifs in unaligned nucleotide and…
Installing BLAT- A Pairwise Alignment Tool on Ubuntu
BLAT is a pairwise sequence alignment algorithm that is used in the…
RNAIndel: A tool to identify somatic indels from tumor RNA-seq data
It is a challenging task to discover somatic coding indels that are…
Tutorial: Installing Autodock Vina on Windows
We have provided several tutorials on Autodock Vina software including its installation…
Predict putative protein targets for small molecules using a new tool
It is computationally costly to predict target proteins for query compounds or…
Converting smiles into 3D structures using openbabel.
Openbabel is used to inter-convert many file formats . It is available…
Plugin to visualize CASTp results in PyMOL
CASTp (Computed Atlas of Surface Topography of proteins) server is used to…
Operations on FASTA files using Perl, PHP, and Bash commands
We have published various articles on bioinformatics programming dealing with large files…
Genozip- a new compression tool for VCF files
Variant Call Format (VCF) is a text file format used to store…
Installing CHARMM on Ubuntu
CHARMM (Chemistry at Harvard Molecular Mechanics) is a molecular simulation program that…
Installing PyMol on Ubuntu
PyMol is a molecular visualization software that is freely available for education-use-only…
Homology search against a local dataset using NCBI-BLAST+ command-line tool
NCBI-BLAST+ command-line tool offers multiple functions to be performed on a large…
Modifying multi-FASTA files using Bash: ‘Sed’ Command
Dealing with thousands of FASTA sequences is a tedious task without using…
Multiple Sequence Alignment and Phylogenetic Tree construction using ClustalW2 command-line tool
ClustalW2 is a bioinformatics tool for multiple sequence alignment of DNA or…
How to perform graph-based clustering of peptide/protein sequences using MCL?
Markov Cluster Algorithm (MCL) is a clustering algorithm that clusters networks .…
Tutorial: MD simulation output analysis of protein using GROMACS
Molecular dynamics (MD) simulation is an important step in studying the dynamics…
Update: Selection analysis on spike glycoproteins of SARS-CoV
In our last article, we mentioned the selection pressure analysis of SARS-CoV-2…
SciPRank: A quantitative method for evaluation of Research personnel in scientific setup
Background A journal’s relevance is generally estimated by its impact factor (Web…