I am performing VS of 100 compounds. I have defined ligand names in a file named ligands.txt.
But it is showing this error after running vina command:
Error: Could not open file ligands.txt
Please tell me what I did wrong.
- Make sure you have named your ligand names file as “ligands.txt”.
- Check if this file is present in the same directory from where you are performing virtual screening.
- If this file is not there, then either provide a full path for this file or place this file in the same directory.
- Make sure it has permissions. If not, then type the following command:
$ sudo chmod +x ligands.txt