![[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?](https://bioinformaticsreview.com/wp-content/uploads/2021/10/zn-400x240.jpg)
![[Tutorial] How to perform docking of zinc metalloproteins using Autodock Vina?](https://bioinformaticsreview.com/wp-content/uploads/2021/10/zn-80x80.jpg)
Proteins containing zinc atoms are docked in a different way than that of the normal simple proteins. Zinc atoms must be considered by a force field...
![[Tutorial] Installing Autodock-Vina-develop package on Ubuntu.](https://bioinformaticsreview.com/wp-content/uploads/2021/10/adv-dev-400x240.jpg)
![[Tutorial] Installing Autodock-Vina-develop package on Ubuntu.](https://bioinformaticsreview.com/wp-content/uploads/2021/10/adv-dev-80x80.jpg)
Autodock-Vina-develop [1,2] package offers some extra features in addition to Autodock Vina. It includes AutoDock4.2 and Vina scoring functions, a batch mode for virtual screening using...
Circular RNAs serve as markers for diagnosis and therapeutic targets of several diseases such as cardiovascular diseases, cancer, and autoimmune diseases. New software is developed for...
I-TASSER [1] is another most widely used bioinformatics software. It is used for protein three-dimensional structure modeling. In this article, we are going to discuss its...
A new toolkit called CoolBox is developed for the visual analysis of genomic data [1]. It makes it easy to visualize patterns in a large-scale genomic...
Trimmomatic is a read trimming tool for Illumina NGS data [1]. It is a flexible tool providing several functions to be operated on reads. These functions...
A configuration file is one of the required files for docking using Autodock Vina. In this article, we are going to generate a config file using...
Autodock [1] is most widely used for docking. To accelerate the docking process, especially, during virtual screening, Autodock-GPU [2] provides great help. In this article, we...
Autodock Vina [1] is one of the most widely used bioinformatics software for computational docking. For beginners and those who are new to the field of...
GROMACS stands for GROningen MAchine for Chemical Simulations [1]. It is a very popular and one of the most widely used open-source bioinformatics software. It is...
